Java源码示例：org.hl7.fhir.dstu3.model.ListResource
示例1
protected SectionComponent processProceduresSection(Element section) throws Exception {
ListResource list = new ListResource();
for (Element entry : cda.getChildren(section, "entry")) {
Element procedure = cda.getlastChild(entry);
if (cda.hasTemplateId(procedure, "2.16.840.1.113883.10.20.22.4.14")) {
processProcedure(list, procedure, ProcedureType.Procedure);
} else if (cda.hasTemplateId(procedure, "2.16.840.1.113883.10.20.22.4.13")) {
processProcedure(list, procedure, ProcedureType.Observation);
} else if (cda.hasTemplateId(procedure, "2.16.840.1.113883.10.20.22.4.12")) {
processProcedure(list, procedure, ProcedureType.Act);
} else
throw new Exception("Unhandled Section template ids: "+cda.showTemplateIds(procedure));
}
// todo: text
SectionComponent s = new Composition.SectionComponent();
s.setCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")));
// todo: check subject
s.addEntry(Factory.makeReference(addReference(list, "Procedures", makeUUIDReference())));
return s;
}
示例2
protected SectionComponent processAdverseReactionsSection(Element section) throws Exception {
ListResource list = new ListResource();
for (Element entry : cda.getChildren(section, "entry")) {
Element concern = cda.getChild(entry, "act");
if (cda.hasTemplateId(concern, "2.16.840.1.113883.10.20.22.4.30")) {
processAllergyProblemAct(list, concern);
} else
throw new Exception("Unhandled Section template ids: "+cda.showTemplateIds(concern));
}
// todo: text
SectionComponent s = new Composition.SectionComponent();
s.setCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")));
// todo: check subject
s.addEntry(Factory.makeReference(addReference(list, "Allergies, Adverse Reactions, Alerts", makeUUIDReference())));
return s;
}
示例3
protected SectionComponent processSocialHistorySection(Element section) throws Exception {
ListResource list = new ListResource();
for (Element entry : cda.getChildren(section, "entry")) {
Element observation = cda.getlastChild(entry);
if (cda.hasTemplateId(observation, "2.16.840.1.113883.10.20.22.4.38")) {
processSocialObservation(list, observation, SocialHistoryType.SocialHistory);
} else if (cda.hasTemplateId(observation, "2.16.840.1.113883.10.20.15.3.8")) {
processSocialObservation(list, observation, SocialHistoryType.Pregnancy);
} else if (cda.hasTemplateId(observation, "2.16.840.1.113883.10.20.22.4.78")) {
processSocialObservation(list, observation, SocialHistoryType.SmokingStatus);
} else if (cda.hasTemplateId(observation, "2.16.840.1.113883.10.20.22.4.85")) {
processSocialObservation(list, observation, SocialHistoryType.TobaccoUse);
} else
throw new Exception("Unhandled Section template ids: "+cda.showTemplateIds(observation));
}
// todo: text
SectionComponent s = new Composition.SectionComponent();
s.setCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")));
// todo: check subject
s.addEntry(Factory.makeReference(addReference(list, "Procedures", makeUUIDReference())));
return s;
}
示例4
protected SectionComponent processVitalSignsSection(Element section) throws Exception {
ListResource list = new ListResource();
for (Element entry : cda.getChildren(section, "entry")) {
Element organizer = cda.getlastChild(entry);
if (cda.hasTemplateId(organizer, "2.16.840.1.113883.10.20.22.4.26")) {
processVitalSignsOrganizer(list, organizer);
} else
throw new Exception("Unhandled Section template ids: "+cda.showTemplateIds(organizer));
}
// todo: text
SectionComponent s = new Composition.SectionComponent();
s.setCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")));
// todo: check subject
s.addEntry(Factory.makeReference(addReference(list, "Vital Signs", makeUUIDReference())));
return s;
}
示例5
@Update
public MethodOutcome updateList(HttpServletRequest theRequest, @ResourceParam ListResource list, @IdParam IdType theId, @ConditionalUrlParam String theConditional, RequestDetails theRequestDetails) {
resourcePermissionProvider.checkPermission("update");
MethodOutcome method = new MethodOutcome();
method.setCreated(true);
OperationOutcome opOutcome = new OperationOutcome();
method.setOperationOutcome(opOutcome);
try {
log.info(theId.getId());
ListResource newList = listDao.create(ctx, list, theId, theConditional);
method.setId(newList.getIdElement());
method.setResource(newList);
} catch (Exception ex) {
ProviderResponseLibrary.handleException(method,ex);
}
return method;
}
示例6
@Create
public MethodOutcome createList(HttpServletRequest theRequest, @ResourceParam ListResource list) {
resourcePermissionProvider.checkPermission("create");
MethodOutcome method = new MethodOutcome();
method.setCreated(true);
OperationOutcome opOutcome = new OperationOutcome();
method.setOperationOutcome(opOutcome);
try {
ListResource newList = listDao.create(ctx, list,null,null);
method.setId(newList.getIdElement());
method.setResource(newList);
} catch (Exception ex) {
ProviderResponseLibrary.handleException(method,ex);
}
return method;
}
示例7
private void addEvaluatedResourcesToParameters(Bundle contained, Parameters parameters) {
Map<String, Resource> resourceMap = new HashMap<>();
if (contained.hasEntry()) {
for (Bundle.BundleEntryComponent entry : contained.getEntry()) {
if (entry.hasResource() && !(entry.getResource() instanceof ListResource)) {
if (!resourceMap.containsKey(entry.getResource().getIdElement().getValue())) {
parameters.addParameter(new Parameters.ParametersParameterComponent().setName("resource")
.setResource(entry.getResource()));
resourceMap.put(entry.getResource().getIdElement().getValue(), entry.getResource());
resolveReferences(entry.getResource(), parameters, resourceMap);
}
}
}
}
}
示例8
protected ListEntryComponent addItemToList(ListResource list, DomainResource ai)
throws Exception {
list.getContained().add(ai);
String n = nextRef();
ai.setId(n);
ListEntryComponent item = new ListResource.ListEntryComponent();
list.getEntry().add(item);
item.setItem(Factory.makeReference("#"+n));
return item;
}
示例9
@Read()
public ListResource getList(@IdParam IdType listId) {
resourcePermissionProvider.checkPermission("read");
ListResource form = listDao.read(ctx,listId);
if ( form == null) {
throw OperationOutcomeFactory.buildOperationOutcomeException(
new ResourceNotFoundException("No List/ " + listId.getIdPart()),
OperationOutcome.IssueType.NOTFOUND);
}
return form;
}
示例10
@Search
public List<ListResource> searchQuestionnaire(HttpServletRequest theRequest,
@OptionalParam(name = ListResource.SP_IDENTIFIER) TokenParam identifier,
@OptionalParam(name= ListResource.SP_RES_ID) StringParam id,
@OptionalParam(name = ListResource.SP_PATIENT) ReferenceParam patient
) {
return listDao.searchListResource(ctx, identifier,id,patient);
}
示例11
private void processAllergiesSection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
scanSection("Allergies", section);
ListResource list = new ListResource();
list.setId(context.baseId+"-list-allergies");
list.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/list-daf-dafallergylist");
list.setSubject(context.subjectRef);
list.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")), null));
list.setTitle(cda.getChild(section, "title").getTextContent());
list.setStatus(ListStatus.CURRENT);
list.setDateElement(context.now);
list.setSource(context.authorRef);
list.setMode(ListMode.SNAPSHOT);
buildNarrative(list, cda.getChild(section, "text"));
int i = 0;
for (Element c : cda.getChildren(section, "entry")) {
Element apa = cda.getChild(c, "act"); // allergy problem act
AllergyIntolerance ai = new AllergyIntolerance();
ai.setId(context.baseId+"-allergy-"+Integer.toString(i));
ai.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/allergyintolerance-daf-dafallergyintolerance");
i++;
ai.setPatient(context.subjectRef);
ai.setAssertedDateElement(convert.makeDateTimeFromTS(cda.getChild(cda.getChild(apa, "effectiveTime"), "low")));
boolean found = false;
for (Element e : cda.getChildren(apa, "id")) {
Identifier id = convert.makeIdentifierFromII(e);
ai.getIdentifier().add(id);
}
if (!found) {
list.addEntry().setItem(new Reference().setReference("AllergyIntolerance/"+ai.getId()));
Element ao = cda.getChild(cda.getChild(apa, "entryRelationship"), "observation"); // allergy observation
if (!cda.getChild(ao, "value").getAttribute("code").equals("419511003"))
throw new Error("unexpected code");
// nothing....
// no allergy status observation
List<Element> reactions = cda.getChildren(ao, "entryRelationship");
Element pe = cda.getChild(cda.getChild(cda.getChild(ao, "participant"), "participantRole"), "playingEntity");
Element pec = cda.getChild(pe, "code");
if (pec == null || !Utilities.noString(pec.getAttribute("nullFlavor"))) {
String n = cda.getChild(pe, "name").getTextContent();
// if (n.contains("No Known Drug Allergies") && reactions.isEmpty())
// ai.setSubstance(new CodeableConcept().setText(n)); // todo: what do with this?
// else
ai.setCode(new CodeableConcept().setText(n));
} else
ai.setCode(inspectCode(convert.makeCodeableConceptFromCD(pec), null));
recordAllergyCode(ai.getCode());
if (!reactions.isEmpty()) {
AllergyIntoleranceReactionComponent aie = ai.addReaction();
for (Element er : reactions) {
Element ro = cda.getChild(er, "observation");
aie.addManifestation(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(ro, "value")), null));
}
}
saveResource(ai);
}
}
saveResource(list);
}
示例12
private void processVitalSignsSection(CDAUtilities cda, Convert convert, Element section, Context context) throws Exception {
scanSection("Vital Signs", section);
ListResource list = new ListResource();
list.setId(context.baseId+"-list-vitalsigns");
//. list.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/list-daf-dafproblemlist"); no list
list.setSubject(context.subjectRef);
list.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(section, "code")), null));
list.setTitle(cda.getChild(section, "title").getTextContent());
list.setStatus(ListStatus.CURRENT);
list.setMode(ListMode.SNAPSHOT);
list.setDateElement(context.now);
list.setSource(context.authorRef);
buildNarrative(list, cda.getChild(section, "text"));
int i = 0;
for (Element c : cda.getChildren(section, "entry")) {
Element org = cda.getChild(c, "organizer"); // problem concern act
for (Element oc : cda.getChildren(org, "component")) {
Element o = cda.getChild(oc, "observation"); // problem concern act
Observation obs = new Observation();
obs.setId(context.baseId+"-vitals-"+Integer.toString(i));
obs.setUserData("profile", "http://hl7.org/fhir/StructureDefinition/observation-daf-vitalsigns-dafvitalsigns");
i++;
obs.setSubject(context.subjectRef);
obs.setContext(new Reference().setReference("Encounter/"+context.encounter.getId()));
obs.setCode(inspectCode(convert.makeCodeableConceptFromCD(cda.getChild(o, "code")), null));
boolean found = false;
for (Element e : cda.getChildren(o, "id")) {
Identifier id = convert.makeIdentifierFromII(e);
obs.getIdentifier().add(id);
}
if (!found) {
list.addEntry().setItem(new Reference().setReference("Observation/"+obs.getId()));
obs.setStatus(ObservationStatus.FINAL);
obs.setEffective(convert.makeDateTimeFromTS(cda.getChild(o, "effectiveTime")));
String v = cda.getChild(o, "value").getAttribute("value");
if (!Utilities.isDecimal(v, true)) {
obs.setDataAbsentReason(inspectCode(new CodeableConcept().setText(v), null));
} else
obs.setValue(convert.makeQuantityFromPQ(cda.getChild(o, "value")));
saveResource(obs, "-vs");
}
}
}
saveResource(list, "-vs");
}
示例13
protected String processVitalSignsObservation(Element comp, ListResource list) throws Exception {
Element observation = cda.getChild(comp, "observation");
cda.checkTemplateId(observation, "2.16.840.1.113883.10.20.22.4.27");
checkNoNegationOrNullFlavor(observation, "Vital Signs Observation");
checkNoSubject(observation, "Vital Signs Observation");
Observation obs = new Observation();
// SHALL contain at least one [1..*] id (CONF:7300).
for (Element e : cda.getChildren(observation, "id"))
obs.getIdentifier().add(convert.makeIdentifierFromII(e));
// SHALL contain exactly one [1..1] code, which SHOULD be selected from ValueSet Vital Sign Result Value Set 2.16.840.1.113883.3.88.12.80.62 DYNAMIC (CONF:7301).
obs.setCode(convert.makeCodeableConceptFromCD(cda.getChild(observation, "code"))); // all loinc codes
// SHOULD contain zero or one [0..1] text (CONF:7302).
// The text, if present, SHOULD contain zero or one [0..1] reference (CONF:15943).
// The reference, if present, SHOULD contain zero or one [0..1] @value (CONF:15944).
// This reference/@value SHALL begin with a '#' and SHALL point to its corresponding narrative (using the approach defined in CDA Release 2, section 4.3.5.1) (CONF:15945).
// todo: put this in narrative if it exists?
// SHALL contain exactly one [1..1] statusCode (CONF:7303). This statusCode SHALL contain exactly one [1..1] @code="completed" Completed (CodeSystem: ActStatus 2.16.840.1.113883.5.14 STATIC) (CONF:19119).
// ignore
// SHALL contain exactly one [1..1] effectiveTime (CONF:7304).
obs.setEffective(convert.makeMatchingTypeFromIVL(cda.getChild(observation, "effectiveTime")));
// SHALL contain exactly one [1..1] value with @xsi:type="PQ" (CONF:7305).
obs.setValue(convert.makeQuantityFromPQ(cda.getChild(observation, "value")));
// MAY contain zero or one [0..1] interpretationCode (CONF:7307).
obs.setInterpretation(convert.makeCodeableConceptFromCD(cda.getChild(observation, "interpretationCode")));
// MAY contain zero or one [0..1] methodCode (CONF:7308).
obs.setMethod(convert.makeCodeableConceptFromCD(cda.getChild(observation, "methodCode")));
// MAY contain zero or one [0..1] targetSiteCode (CONF:7309).
obs.setBodySite(convert.makeCodeableConceptFromCD(cda.getChild(observation, "targetSiteCode")));
// MAY contain zero or one [0..1] author (CONF:7310).
if (cda.getChild(observation, "author") != null)
obs.getPerformer().add(makeReferenceToPractitionerForAssignedEntity(cda.getChild(observation, "author"), composition));
// make a contained practitioner
String n = nextRef();
obs.setId(n);
list.getContained().add(obs);
return n;
}
示例14
public ListResource.ListStatus getStatus() {
return status;
}
示例15
public void setStatus(ListResource.ListStatus status) {
this.status = status;
}
示例16
public ListResource.ListMode getMode() {
return mode;
}
示例17
public void setMode(ListResource.ListMode mode) {
this.mode = mode;
}
示例18
public ListResource.ListMode getMode() {
return mode;
}
示例19
public void setMode(ListResource.ListMode mode) {
this.mode = mode;
}
示例20
List<ListEntity> searchListEntity(FhirContext ctx,
@OptionalParam(name = ListResource.SP_IDENTIFIER) TokenParam identifier,
@OptionalParam(name = ListResource.SP_RES_ID) StringParam id,
@OptionalParam(name = ListResource.SP_PATIENT) ReferenceParam patient
);
示例21
@Override
public Class<? extends IBaseResource> getResourceType() {
return ListResource.class;
}
示例22
List<ListResource> searchListResource(FhirContext ctx,
@OptionalParam(name = ListResource.SP_IDENTIFIER) TokenParam identifier,
@OptionalParam(name = ListResource.SP_RES_ID) StringParam id,
@OptionalParam(name = ListResource.SP_PATIENT) ReferenceParam patient
);
示例23
ListResource read(FhirContext ctx, IdType theId);
示例24
ListResource create(FhirContext ctx, ListResource questionnaire, @IdParam IdType theId, @ConditionalUrlParam String theConditional) throws OperationOutcomeException;
